Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015854501.1_cds_XP_016512573.1_25203
CDS Infomation

[gene=LOC107829635] [db_xref=GeneID:107829635] [protein=proton pump-interactor 1-like] [protein_id=XP_016512573.1] [location=complement(join(4809..5120,5216..5737,5816..5914,6173..6367,6478..6657,6779..6973,7299..7664))] [gbkey=CDS]
Sequence

ATGGGTAGAGACATGGAATCTCAGTTAGCTCATGTTTCAGTTGAAACTGGAACTGAACAG
AAAAACCTTCCGAAGGAAAACAAAAAAAAGAATCATGGTGTAGGGGTTAATGAGACTATA
AAATTTCGCTCGCATGGTTCTCAAGAAACAAATAAGGAGGCGGGGAAAAATGTTCCTGTG
AGCAGCCTCCGGAAGGATGCAGTTGACGACTGGCCTGCACCTAAGCAGATACATTCTTTC
TATATTGTTAGATATCGAAGATTTGAAGACCAAAAACTCAAGGCCAAATTTGATCTGGCA
GAAAAAGAGCTACAGAAAATGAACAAAGCAAGATCTCAGGTTATTGAAAAATTGAAGGCC
ATAAGGGCAGAACGATCAAAATTGATAGAACAAAGGAAATCTGTGAGTGCTGAGAATCAG
GAGTTTTGGGCAGTAATTGGTGAGAAAAGAAAGGAAATGGAACCTCTGCAGGATGCCCTG
GGCAAGCTCCGCGGTCCTAGGAAAGCCGGCAGAGAAGGGGGTTCTAGTCTGTGTTCATCC
GAGGAGGAGCTTGACGATCTCATTAAGAGTCTGCAGTACCGTATTCAGCATGAAAGCATT
ACTCTGACTGAAGAGAAACAAATTCTGCGAGAAATTAAACGACTTGAAGGAACAAGGGGA
GAGGTAAGAGACCATATGGCTATGAGGGCACAAATTCAAGATTCGATTGGTGAAAAAGAA
ACAATACAAAAGCAGGTTAAGGCTATAAGTGGTAACCTTGACGGGGTTCGTAAGGAGCAA
CAGGTTGTTAAGGCCAAGCTTAAGCAACTAGATGATCAACTCGATGCCAATACCAGTCAG
ATTAAGTTATTGGATGAGGAATTGAAGGAAATAACAAAGAAGAGGGACACAGCTTTTGCA
CATGTTCTGGAATTAAGAAAACACCGTGAAGAAGGGAATGCTCCTTTCTACCAAAACAAT
GCACTGTTGCAAAAAGCAAAATTGCTAGCAGATAAGAAGGATGTTGAAGCCCTTAAAGAA
CTCTCACTTACAGAGGTCGATAAATTCATTTCCCTATGGAGTGGCAGTAAGCCCTTTAGG
GATGATTATGAGAGGAGAATTTTAACATCACTTGATATTAGGCAGTTGAGCCAAGATGGC
AGGATGAGGAACCCTGACGAAAAGCCTCTAGTATTACCAGCGGCACAGACTGTTTCCCAA
TCTGAGATTGTTGAAAGAACTAATACGAAACCATTAAAGGAAGAATCAGCGCCTCCTGCT
CAGAAAGTACAGAAAGAGAAGAACAACAAGCAGCCAAAAGAAGCAAGTAGCAAAGTTACA
GAAAGTACCACGAAAAAGTACATCTTTGATATCGAAGAGGAAATCCATGGTTTAGAAAAG
CAACCCAAGGATATGACTTCCAAGAAGGAAGTTGATGAAGCGAAATTGAGGGAGATGAAG
AGAGAGGAAGAAATAGCAAAAAATAAGAAGGCAATGGAGAGGAAGAAGAAGTTGGCCGAG
AAAGCAGCTGCCAAAGCAGCAATAAAAGCTCAAAAAGAAGCTGAAAGGAAGCTCAAGGAA
CGTGAGAAGAAGGCGAAGAAGAAAACTGGAGCATCTGTTCCTGCTGAAGAATCTACTGAG
GAACCAACTGAAGCAGCTGCGGAAGTTGCTGAGGAAGAGAAGGCGGAGGAAAAGGTTGAA
ACATCGGTTGCACCTAAGGTTAAGGCACCGAAAGAGAATACTATCAGGAGCCGATCAAAG
CGTGCAAAAGGCATGGATATTCCTAAAACTATACTGAAGCGGAAAAAGGCGATGAACTAT
TGGCTATGGGCTGCTCCTGCTGCTCTTGTAGTTCCACTACTACTAGTAGCATACAAGTAT
ATTCTCTAG

Peptide Sequence

PEP ID

XP_016512573.1
PEP Infomation

PREDICTED: proton pump-interactor 1-like [Nicotiana tabacum]
Sequence

MGRDMESQLAHVSVETGTEQKNLPKENKKKNHGVGVNETIKFRSHGSQETNKEAGKNVPV
SSLRKDAVDDWPAPKQIHSFYIVRYRRFEDQKLKAKFDLAEKELQKMNKARSQVIEKLKA
IRAERSKLIEQRKSVSAENQEFWAVIGEKRKEMEPLQDALGKLRGPRKAGREGGSSLCSS
EEELDDLIKSLQYRIQHESITLTEEKQILREIKRLEGTRGEVRDHMAMRAQIQDSIGEKE
TIQKQVKAISGNLDGVRKEQQVVKAKLKQLDDQLDANTSQIKLLDEELKEITKKRDTAFA
HVLELRKHREEGNAPFYQNNALLQKAKLLADKKDVEALKELSLTEVDKFISLWSGSKPFR
DDYERRILTSLDIRQLSQDGRMRNPDEKPLVLPAAQTVSQSEIVERTNTKPLKEESAPPA
QKVQKEKNNKQPKEASSKVTESTTKKYIFDIEEEIHGLEKQPKDMTSKKEVDEAKLREMK
REEEIAKNKKAMERKKKLAEKAAAKAAIKAQKEAERKLKEREKKAKKKTGASVPAEESTE
EPTEAAAEVAEEEKAEEKVETSVAPKVKAPKENTIRSRSKRAKGMDIPKTILKRKKAMNY
WLWAAPAALVVPLLLVAYKYIL

Transcript Sequence

Gene sequence data has not been registered.